Package: TDIagree 0.3.0

Anna Felip-Badia

TDIagree: Assessment of Agreement using the Total Deviation Index

The total deviation index (TDI) is an unscaled statistical measure used to evaluate the deviation between paired quantitative measurements when assessing the extent of agreement between different raters. It describes a boundary such that a large specified proportion of the differences in paired measurements are within the boundary (Lin, 2000) <doi:10.1002/(SICI)1097-0258(20000130)19:2%3C255::AID-SIM293%3E3.0.CO;2-8>. This R package implements some methodologies existing in the literature for TDI estimation and inference in the case of two raters.

Authors:Anna Felip-Badia [aut, cre], Sara Perez-Jaume [aut], Josep L Carrasco [aut]

TDIagree_0.3.0.tar.gz
TDIagree_0.3.0.zip(r-4.7-any)TDIagree_0.3.0.zip(r-4.6-any)TDIagree_0.3.0.zip(r-4.5-any)
TDIagree_0.3.0.tgz(r-4.6-any)TDIagree_0.3.0.tgz(r-4.5-any)
TDIagree_0.3.0.tar.gz(r-4.7-any)TDIagree_0.3.0.tar.gz(r-4.6-any)
TDIagree_0.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
TDIagree/json (API)

# Install 'TDIagree' in R:
install.packages('TDIagree', repos = c('https://bimau-pccb.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bimau-pccb/tdiagree/issues

Datasets:
  • AMLad - Acute Myeloid Leukaemia agreement data

On CRAN:

Conda:

4.56 score 12 scripts 231 downloads 2 exports 90 dependencies

Last updated from:5f2517ec0d. Checks:7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develWARNING189
source / vignettesOK409
linux-releaseWARNING201
macos-releaseWARNING269
macos-oldrelWARNING230
windows-develWARNING134
windows-releaseWARNING163
windows-oldrelWARNING117
wasm-releaseOK154

Exports:descriptive.plotsTDI

Dependencies:askpassbase64encbigDbitopsbootbslibcachemclicodetoolscommonmarkcpp11curldata.tabledigestdplyrevaluatefarverfastmapflextablefontawesomefontBitstreamVerafontLiberationfontquiverfsfurnituregdtoolsgenericsgluegthighrhtmltoolshtmlwidgetsjquerylibjsonlitejuicyjuicekatexknitrlabelinglatticelifecyclelitedownmagrittrmarkdownMASSMatrixmemoisemimemultcompmvtnormnlmeofficeropensslpillarpkgconfigplotfunctionspurrrR6raggrappdirsRColorBrewerRcppreactablereactRrlangrmarkdownsandwichsassscalesstringistringrsurvivalsyssystemfontstextshapingTH.datatibbletidyrtidyselecttinytexutf8uuidV8vctrsviridisLitewithrxfunxml2yamlzipzoo

Bland-Altman plot
Introduction | References
Rendered fromv3.plot.tdi.Rmdusingknitr::rmarkdown

Last update: 2026-10-16
Started: 2026-10-16

Descriptive plots for the assessment of agreement
Introduction | Scatterplot | Boxplots per rater and replicate | Histograms of the measurements per rater and replicate | Normal quantile–quantile plots of the measurements per rater and replicate | Histograms of the paired-differences | Normal quantile-quantile plot of the paired-differences
Rendered fromv1.descriptive.plots.Rmdusingknitr::rmarkdown

Last update: 2026-10-16
Started: 2026-10-16

TDI estimation and inference
Introduction | General arguments | Method-specific arguments | Parametric method of Choudhary | Parametric method of Escaramís et al. | Non-parametric method of Choudhary | Non-parametric method of Perez-Jaume and Carrasco | Considerations | References
Rendered fromv2.TDI.Rmdusingknitr::rmarkdown

Last update: 2026-10-16
Started: 2026-10-16